Fargeot L., Poesy C., Lefort M., Prunier J.P.G., Krick M., Verdonck V., Veyssière C., Richard M., Legrand D., Loot G. and  Blanchet S.

 (2025) - Genetic diversity affects ecosystem functions across tropphic levels as much as species diversity, but in an opposite direction. - ELife 

Richard, M., Garreau A., Bestion E., Cucherousset J., Montoya J.M. and  Blanchet S.

 (2025) - The Aquatic Metatron: A large-scale experimental facility to study the combined effects of habitat fragmentation and climate change on aquatic meta-ecosystems. - Methods in Ecology and Evolution. 

Deluen M., Loot G., Bertrand R., Aubret F., Valentini A., Calvez O., Delmas C., Le Chevalier H., Muratet J., Pottier G., Ribéron A., Rolet S., Dubut V., Trochet A. and  Blanchet S.

 (2024) - Development of an environmental and faecal DNA tool for monitoring the spatial distribution and fish predation on the mountain amphibian Calotriton asper. - Aquatic Conservation 34: e70034

Bazin, S., Morla, J., Diouloufet, V., Molina, A., Peroux, T., Lassus, R., Montoya J.M.,  Blanchet S., Edeline, E., Jacquet, S., Rasconi, S., Fayolle, S., Campana, M., Zambeaux, T., Leclerc, C., Daufresne, M. and Sentis, A.

 (2024) - Direct effect of artificial warming on communities is stronger than its indirect effect through body mass reduction - Oikos 10: e10561

Marques, V.,  Blanchet S., Loot G., Miaud C., Planes S., Peyran C., Arnal V., Calvet C., Pioch S. and Manel S.

 (2024) - Optimizing detectability of the endagered fan mussel using eDNA and ddPCR. - Ecology and Evolution 14: e10807

Diot, A., Groth, G.,  Blanchet S., and Chervin, C..

 (2024) - Responses of animals and plants to physiological doses of ethanol: a molecular messenger of hypoxia? - The FEBS Journal 291: 1102-1110

Langford N., Fargeot L. and Blanchet S.

 (2024) - Spatial covariation between genetic and epigenetic diversity in wild plant and animal populations: a meta-analysis. - The Journal of Experimental BIology 7: 227(suppl 1): jeb246009

Duval, E.,  Blanchet S., Quéméré E., Jacquin L., Veyssière C. and Loot G.

 (2024) - When does a parasite become a disease? eDNA unravels complex host-pathogen dynamics across environmental stress gradients in wild salmonid populations. - Science of the Total Environment 946, 174367

 

 (2023) - Genomic and species diversity patterns across multiple trophic levels in riverscapes - Oikos 

 Fargeot L, Poesy C, Lefort M, Prunier JG, Krick M, Veyssière C, Richard M, Mercier C, Sautreuil M, Huberson N, Langford N, Legrand D, Loot G, Blanchet S

 (2023) - Genomic and species diversity patterns across multiple trophic levels in riverscapes - Oikos e10015

Duval, E., Quéméré, E., Loot, G., Jacquin, L., Veyssière, C. & Blanchet, S.

 (2022) - A multifaceted index of population health to detect risk-prone populations and underlying stressors in wildlife - Biological Conservation 109706

 Cote J, Dahirel M, Schtickzelle, Nicolas, Altermatt F, Ansart A, Blanchet S, Chaine A, De Laender F, De Raedt J, Haegeman B, Jacob S, Kaltz O, Laurent E, Little C, Madec L, Manzi F, Masier S, Pellerin F, Pennekamp F, Therry L, Vong A, Winandy L, Bonte D, Fronhofer E, Legrand D

 (2022) - Dispersal syndromes in challenging environments: a cross-species experiment - Ecology Letters 25(12):2675-2687

Mathieu-Bégné, E., Loot, G., Mazé-Guilmo, E., Mullet, V., Genthon, C. and Blanchet, S

 (2021) - Combining species distribution models and population genomics underlines the determinants of range limitation in an emerging parasite - Ecography In press

Legrand D., Blanchet S.

 (2021) - Evolutionary Dynamics of Wild Populations - Genes 12(5):778

De Kort H., Prunier J., Ducatez S., Honnay O., Baguette M., Stevens V., and Blanchet S.

 (2021) - Life history, climate and biogeography interactively affect worldwide genetic diversity of plant and animal populations. - Nature Communications 12: 516

Fargeot L., Loot G., Prunier J.G., Rey O., Veyssière C. and Blanchet S.

 (2021) - Patterns of epigenetic diversity in two sympatric fish species: Genetic vs. environmental determinants. - Genes 12, 107

Côte J., Morisseau O., Pilisi C., Veyssière C., Perrault A., Jezequel C., Loot G., Blanchet S., Jean S. and Jacquin L.

 (2021) - Urbanization and eutrophication as drivers of morphological and physiological divergence among riverine fish populations - Freshwater Biology In press

Duval, E., Blanchet, S., Quéméré, E., Jacquin, L., Veyssière, C., Lautraite, A., Garmendia, L., Yotte, A., Parthuisot, N., Côte, J., & Loot, G.

 (2021) - Urine DNA (uDNA) as a non-lethal method for endoparasite biomonitoring: Development and validation - Environmental DNA 00, 1–11

Blanchet S., Prunier JPG, Paz-Vinas I, Saint-Pé K, Rey O, Raffard A, Mathieu-Bégné E, Loot G, Fourtune L & Dubut V

 (2020) - A river runs through it: The causes, consequences and managment of intraspecific diversity in river networks - Evolutionary Applications 13: 1195-1213

Jabot F., Laroche F. Massol, F.,Arthaud A., Crabot J., Dubart M., Blanchet S. , Munoz F., David P., & Datry T

 (2020) - Assessing metacommunity processes through signatures in spatiotemporal turnover of community composition - Ecology Letters 23: 1330-1339

Bertrand R, Aubret F, Grenouillet G, Ribéron A and Blanchet S.

 (2020) - Comment on “Forest microclimate dynamics drive plant responses to warming”. - Science 10.1126/science.abd3850

Therry L., Raffard A., Finn F., Koch K., Brodin T., Blanchet S. & Cote J.

 (2020) - Does range expansion modify trait covariation? An experimental test in a northward expanding dragonfly. - Oecologia 192(2): 565-575

 

Baltazar-Soares M., Blanchet S., Cote J., Tarkan A., Záhorská E., Gozlan R., Eizaguirre C.

 (2020) - Genomic footprints of a biological invasion: introduction from Asia and dispersal in Europe of the topmouth gudgeon (Pseudorasbora parva) - Molecular Ecology 29 (1): 71-85

Manel S., Finn F., Guérin P.E., Mouillot D., Blanchet S., Velez L., Albouy C., & Pellissier L.

 (2020) - Global determinants of freshwater and marine fish genetic diversity. - Nature Communications 11: 692

Raffard A., Santoul F., Blanchet S. & Cucherousset J. 

 (2020) - Linking intraspecific variability in trophic and functional niches along an environmental gradient. - Freshwater Biology 13508

Prunier J., Poésy C., Dubut V., Veyssière C., Loot G., Poulet N. & Blanchet S.

 (2020) - Quantifying the individual impact of barriers in freshwaters: A standardized and absolute index of genetic connectivity - Evolutionary Applications 13: 2566-2581

Cuff A.L., Lou Y., Zhigang J., Baguette M., Blanchet S., Clobert J. & al.

 (2019) - BMC ecology image competition 2018: the winning images. - BMC Ecology 19:11

Mathieu-Bégné E., Loot G., Blanchet S., Toulza E., Genthon C. & Rey O.

 (2019) - De novo transcriptome assembly for Tracheliastes polycolpus, an invasive ectoparasite of freshwater fish in western Europe. - Marine Genomics 46: 58-61

Mathieu-Bégné E., Loot G., Chevalier M., Paz-Vinas I. & Blanchet S. 

 (2019) - Demographic and genetic collapses in spatially structured populations: insights from a long-term survey in wild fish metapopulations. - Oikos 128: 196–207

Saint-Pé K.,  Leitwein M., Tissot L., Poulet N., Guinand B., Berrebi P., Marselli G., Lascaux JM., Gagnaire PA. & Blanchet S.

 (2019) - Development of a large SNPs resource and a low-density SNP array for brown trout (Salmo trutta) population genetics - BMC Genomics 582 (2019)

Danchin E., Pocheville A., Rey O., Pujol B. & Blanchet S. 

 (2019) - Epigenetically facilitated mutational assimilation: epigenetics as a hub within the inclusive evolutionary synthesis: Epigenetics as a hub for genetic assimilation. - Biological Reviews 94: 259-282

Baltazar-Soares M., Blanchet S., Cote J., Tarkan A.S., Zahorska E., Gozlan R.E. & Eizaguirre C.

 (2019) - Genetic footprints of a biological invasion: Introduction from Asia and dispersal in Europe of the topmouth gudgeon (Pseudorasbora parva). - Molecular Ecology 29: 71–85

Therry L., Cote J., Cucherousset J., Finn F., Buoro Y. & S. Blanchet

 (2019) - Genetic, plastic and environmental contributions to the impact of a range-expanding predator on aquatic ecosystems - Journal of Animal Ecology 88: 35-46

Trochet A., Le Chevalier H., Calvez O., Ribéron A., Bertrand R. & Blanchet S. 

 (2019) - Influence of substrate types and morphological traits on movement behavior in a toad and newt species. - PeerJ 6: e6053

Rey O., Eizaguirre C., Angers B., Baltazar-Soares M., Sagonas K., Prunier J. & Blanchet S.

 (2019) - Linking epigenetics and biological conservation: Toward a conservaion epigenetics perspective - Functional Ecology In press

Rey O., Eizaguirre C., Angers B., Baltazar-Soares M., Sagonas K., Prunier J. & Blanchet S.

 (2019) - Linking epigenetics and biological conservation: Toward a conservation epigenetics perspective. - Functional Ecology 34: 414–427

Prunier J., Poésy C., Dubut V., Veyssière C., Loot G., Poulet N. & Blanchet S.

 (2019) - Quantifying the individual impact of barriers in freshwaters: A standardized and absolute index of genetic connectivity. - bioRxiv 809111

Raffard A., Santoul F., Cucherousset J. & Blanchet S.

 (2019) - The community and ecosystem consequences of intraspecific diversity: a meta-analysis: The ecological effects of intraspecific diversity. - Biological Reviews 94(2): 648-661

Raffard A., Cucherousset J., Prunier J., Loot G., Santoul F. & Blanchet S.

 (2019) - Variability of functional traits and their syndromes in a freshwater fish species (Phoxinus phoxinus): The role of adaptive and nonadaptive processes. - Ecology and Evolution 9: 2833-2846

Côte J., Pilissi C., Morisseau O., Veyssière C., Perrault A., Jean S., Blanchet S. & Jacquin L.

 (2019) - Water turbidity affects melanin-based coloration in gudgeon: a reciprocal transplant experiment. - Biological Journal of the Linnean Society In press

Saint-Pé K., Blanchet S., Tissot L., Poulet N., Plasseraud O., Loot G., Veyssière C. & Prunier J.G.

 (2018) -  Genetic admixture between captive-bred and wild individuals affects patterns of dispersal in a brown trout (Salmo trutta) population. - Conservation Genetics 19: 1269–1279

Prunier J.G., Dubut V., Loot G., Tudesque L. and Blanchet S.

 (2018) - The relative contribution of river network structure and anthropogenic stressors to spatial patterns of genetic diversity in two freshwater fishes: A multiple-stressors approach. - Freshwater Biology 63:6–21

Prunier J.G., Dubut V., Loot G., Tudesque L. and Blanchet S.

 (2018) - The Missing Response to Selection in the Wild - Trends in Ecology and Evolution 33:337–346

Fronhofer E., Legrand D., Altermatt F., Anstart A., Blanchet S., Bonte D., Chaine A., Dahirel M., De Laender F., de Raedt J., Di Gesu L., Jacob S., Kaltz O., Laurent E., Little C., Madec L., Manzi F., Masier S., Pellerin F., Pennekamp F., Schtickzelle N., Therry L., Vong A., Winandy L. and Cote J.

 (2018) - Bottom-up and top-down control of dispersal across major organismal groups. - Nature ecology & evolution 2: 1859–1863

Guillerault N., Loot G., Blanchet S. & Santoul F.

 (2018) - Catch-related and genetic outcome of adult northern pike Esox lucius stocking in a large river system. - Journal of Fish Biology 93: 1107-1112

Mathieu-Bégné E., Loot G., Chevalier M., Paz-Vinas I. and Blanchet S.

 (2018) - Demographic and genetic collapses in spatially structured populations: insights from a long-term survey in wild fish metapopulations - Oikos 128(2): 196-207

Marmonier P., Maazouzi C., Baran N., Blanchet S., Ritter A., Saplairoles M., Dole-Olivier M.-J., Galassi D.M.P., Eme D., Dolédec S. & Piscart C.

 (2018) - Ecology-based evaluation of groundwater ecosystems under intensive agriculture: A combination of community analysis and sentinel exposure. - Science of The Total Environment 613–614- 1353–1366

Fourtune L., Prunier J.G., Paz-Vinas I., Loot G., Veyssière C. & Blanchet S.

 (2018) - Inferring Causalities in Landscape Genetics: An Extension of Wright’s Causal Modeling to Distance Matrices. - American Naturalist 191: 491–508

Trochet A.,Le Chevalier H. L., Calvez O., Ribéron A., Bertrand R. and Blanchet S.

 (2018) - Influence of substrate types and morphological traits on movement behavior in a toad and newt species - Peer J DOI10.7717/peerj.6053

Côte J., Boniface A., Blanchet S., Hendry A.P., Gasparini J. and Jacquin L.

 (2018) - Melanin-based coloration and host–parasite interactions under global change. - Proceedings of the Royal Society B: Biological Sciences 285: 20180285

Pujol B., Blanchet S., Charmantier A., Danchin E., Facon B., Marrot P., Roux F., Scotti I., Teplitsky C., Thomson C.E. & Winney I.

 (2018) - The Missing Response to Selection in the Wild. - Trends in Ecology & Evolution 33(5): 337-346

Prunier J.G. and Blanchet S.

 (2018) - Using connectivity to identify climatic drivers of local adaptation: a response to Macdonald et al - Ecology Letters 21:1121–1123

Tedesco P.A., Beauchard O., Bigome R., Blanchet S., Buisson L., Conti L., Cornu J.F., Dias M.S., Grenouillet G., Hugueny B., Jézéquel C., Leprieur F., Brosse S. and Oberdorf

 (2017) - A global database on freshwater fish species occurrence in drainage basins - Scientific Data 4: 170141

Foote C., Darimont C.T., Baguette M., Blanchet S., Jacobus L.M., Mazzi D. et al. 

 (2017) - BMC ecology image competition 2017: the winning images. - BMC Ecology 17

Prunier J.G., Dubut V., Chikhi L. & Blanchet S. 

 (2017) - Contribution of spatial heterogeneity in effective population sizes to the variance in pairwise measures of genetic differentiation. - Methods in Ecology and Evolution 8: 1866–1877

Thomas F., Jacqueline C., Tazzio T., Morgane H., Blanchet S., Loot G., Dawson E., MŽry F., Renaud F., Montagne J., Beckmann C., Biro P., Rodrigo H. and Ujvari B.

 (2017) - The importance of cancer cell communities for animal evolutionary ecology. - Nature ecology & evolution 1: 1592-1595

Blanchet S., Prunier J.G. & De Kort H.

 (2017) - Time to go bigger: emerging patterns in macro-genetics - Trends in Genetics 33: 579-580

Rey O., Danchin E., Mirouze M., Loot C. & Blanchet S. 

 (2016) - Adaptation to Global Change: A Transposable Element–Epigenetics Perspective. - Trends in Ecology & Evolution 31: 514–526

Simundza J., Palmer M., Settele J., Jacobus L.M., Hughes D.P., Mazzi D. & Blanchet S.

 (2016) - BMC Ecology image competition 2016: The winning images. - BMC Ecology 16: 34

Trochet A., Dechartre J., Le Chevalier H., Baillat B., Calvez O., Blanchet S. & Riberon A.

 (2016) - Effects of habitat and fragmented-landscape parameters on amphibian distribution at a large spatial scale. - Herpetological Journal 26: 73

Mazé-Guilmo E., Blanchet S., McCoy K.D. & Loot G. 

 (2016) - Host dispersal as the driver of parasite genetic structure: a paradigm lost? - Ecology Letters 19: 336–347

Fourtune L., Paz-Vinas I., Loot G., Prunier J.G. & Blanchet S.

 (2016) - Lessons from the fish: a multi-species analysis reveals common processes underlying similar species-genetic diversity correlations. - Freshwater Biology 61: 1830-1845

Mazé-Guilmo E., Blanchet S., Rey O., Canto N. & Loot G. 

 (2016) - Local adaptation drives thermal tolerance among parasite populations: a common garden experiment. - Proceedings of the Royal Society of London Series B- Biological Sciences 283: 20160587

Germain M., Blanchet S., Loyau A. & Danchin E. 

 (2016) - Mate-choice copying in Drosophila melanogaster: Impact of demonstration conditions and male–male competition. - Behavioural Processes 125: 76-84

Fletcher D.H., Gillingham P.K., Britton J.R., Blanchet S. & Gozlan R.E.

 (2016) - Predicting global invasion risks: a management tool to prevent future introductions. - Scientific Reports 6: 26316

Podgorniak T., Blanchet S., De Oliveira E., Daverat F. & Pierron F. 

 (2016) - To boldly climb: behavioural and cognitive differences in migrating European glass eels. - Royal Society Open Science 3: 150665

Podgorniak T., Angelini A., Blanchet S., de Oliveira E., Pierron F. & Daverat F. 

 (2015) - Climbing experience in glass eels: A cognitive task or a matter of physical capacities? - Physiology & Behavior 151: 448–455

Paz-Vinas I. & Blanchet S.

 (2015) - Dendritic connectivity shapes spatial patterns of genetic diversity: a simulation-based study. - Journal of Evolutionary Biology 28: 986–994

Rey O., Fourtune L., Paz-Vinas I., Loot G., Veyssière C., Roche B. &  Blanchet S.

 (2015) - Elucidating the spatio-temporal dynamics of an emerging wildlife pathogen using approximate Bayesian computation. - Molecular Ecology 24: 5348–5363

Paz-Vinas I., Loot G., Stevens V.M. & Blanchet S. 

 (2015) - Evolutionary processes driving spatial patterns of intraspecific genetic diversity in river ecosystems. - Molecular Ecology 24: 4586–4604

Villéger S., Blanchet S., Beauchard O., Oberdorff T. & Brosse S. 

 (2015) - From current distinctiveness to future homogenization of the world’s freshwater fish faunas. - Diversity and Distributions 21: 223–235

Genomic Resources Development Consortium, Blanchet S., Bouchez O., Chapman C.A., Etter P.D., Goldberg T.L. & al.

 (2015) - Genomic Resources Notes. - Molecular Ecology Resources 15- 684

Murienne J., Jeziorski C., Holota H., Coissac E., Blanchet S. & Grenouillet G.

 (2015) - PCR-free shotgun sequencing of the stone loach mitochondrial genome (Barbatula barbatula). - Mitochondrial DNA 10: e0117964

Shinn C., Blanchet S., Loot G., Lek S. & Grenouillet G. 

 (2015) - Phenotypic variation as an indicator of pesticide stress in gudgeon: Accounting for confounding factors in the wild. - Science of The Total Environment 538: 733–742

Maze-Guilmo E., Loot G., Paez D.J., Lefevre T. & Blanchet S.

 (2014) - Heritable variation in host tolerance and resistance inferred from a wild host-parasite system. - Proceedings of the Royal Society of London Series B- Biological Sciences 281: 20132567

Blanchet S., Helmus M.R., Brosse S. & Grenouillet G.

 (2014) - Regional vs local drivers of phylogenetic and species diversity in stream fish communities. - Freshwater Biology 59: 450–462

Cheng L., Blanchet S., Loot G., Villéger S., Zhang T., Lek S. & al.

 (2014) - Temporal changes in the taxonomic and functional diversity of fish communities in shallow Chinese lakes: the effects of river-lake connections and aquaculture: Effects of connections and aquaculture on fish. - Aquatic Conservation-Marine and Freshwater Ecosystems 24: 23–34